Publications

Explore our publications in computational pathology, cancer genomics, and medical AI.

Conference

Patch-to-Global: Random Patch Diffusion for Globally Consistent Megapixel Artifact Inpainting in Whole Slide Images

Lee H, Kim E, Bappy DM, Kim HH, Lee Y, Chun SY, Choi JH, Lee SH, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI); Sep. 27-Oct. 1, 2026. (Poster)

PathLLaVA: Continuous Vision-Language Alignment for Bladder Cancer Pathology Report Generation

Hong SM, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Emerging LLM/LMM Applications in Medical Imaging (ELAMI) Workshop; Sep. 27, 2026. (Oral)

A Digital Twin Framework for ICU Delirium Using SAITS-Based Patient State Embeddings

Hong SM, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Digital Twin for Healthcare (DT4H) Workshop; Sep. 27, 2026. (Oral)

Attack Your Own Findings: A Falsification Agent Framework for Biomedical Discovery, Benchmarked on Four Errors We Actually Made

Hong SM, Chun H, Lee H, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2nd Agentic AI for Medicine (MedAgent) Workshop; Oct. 1, 2026. (Poster)

Patch-to-Global: Random Patch Diffusion for Globally Consistent Megapixel Artifact Inpainting in Whole Slide Images

Lee H, Kim E, Bappy DM, Kim HH, Lee Y, Chun SY, Choi JH, Lee SH, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI); Sep. 27-Oct. 1, 2026. (Poster)

PathLLaVA: Continuous Vision-Language Alignment for Bladder Cancer Pathology Report Generation

Hong SM, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Emerging LLM/LMM Applications in Medical Imaging (ELAMI) Workshop; Sep. 27, 2026. (Oral)

A Digital Twin Framework for ICU Delirium Using SAITS-Based Patient State Embeddings

Hong SM, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Digital Twin for Healthcare (DT4H) Workshop; Sep. 27, 2026. (Oral)

Attack Your Own Findings: A Falsification Agent Framework for Biomedical Discovery, Benchmarked on Four Errors We Actually Made

Hong SM, Chun H, Lee H, Ahn S.

International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2nd Agentic AI for Medicine (MedAgent) Workshop; Oct. 1, 2026. (Poster)

Journal

Cancer-associated fibroblasts are associated with CD8+ T cell depletion and poor prognosis in colorectal adenocarcinoma: a multi-omics and machine learning analysis

Shim M, Kim OZ, Son BK, Jo JK, Lee SW, Moon HS, Kim HS, Kwon MJ, Lee SH, Noh YK, Min KW.

Journal of Pathology: Clinical Research. 2026;12(2). doi: 10.1002/2056-4538.70076

IDH-mutant gliomas arise from glial progenitor cells harboring the initial driver mutation

Park JW, Kwak J, Kim KW, Jung S, Nam CH, Kim HJ, Lee SM, Choi C, Ahn Y, Park JH, Yoo J, Shim JK, Cho HJ, Kim EH, Kim C, Ahn S, Pusch S, von Deimling A, Chang JH, Kim SH, Kim H, Ju YS, Kang SG, Lee JH.

Science. 2026;391(6781). doi: 10.1126/science.adt0559

Tumour budding in pretreatment cervical biopsies: a prognosticator for personalised therapy in the era of precision oncology

Lee YS, Yim K, Kim CJ, Kim JH, Lee YS, Jeong S, Lee SH, Bizzarri N, Permata TBM, Kim YS, Lee SW.

Histopathology. 2026;88(5):970-84. doi: 10.1111/his.70053

Comparative Analysis of Deep Learning Approaches for Histopathology-Based Survival Prediction in Hepatocellular Carcinoma

Lee SH, Yim K, Jang HJ.

Cancers. 2026;18(10). doi: 10.3390/cancers18101534

Adaptive compression framework for giga-pixel whole slide images

Lee J, Takemaru L, Bappy DM, Jeong YS, Jeong WK, Oldridge D, Kim D, Ahn S, Lee SH.

Nature Communications. 2026;17(1). doi: 10.1038/s41467-025-66889-0

Subtype classification of gastric spindle cell tumors in whole slide images

Lee H, Lee YJ, Kim E, Lee J, Ahn S, Lee SH.

Computers in Biology and Medicine. 2026;201. doi: 10.1016/j.compbiomed.2025.111410

Expanded but dysfunctional regulatory T cells in treatment-naïve autoimmune hepatitis

Kwon MH, Jang EJ, Tak KY, Cho HS, Han JW, Han ES, Kim Y, Lee H, Jang JW, Lee SH, Sung PS.

Hepatology International. 2026;20(1):163-73. doi: 10.1007/s12072-025-10986-1

Proportion of histologic component predicts lymph node metastasis risk in undifferentiated-type mucosal and submucosal gastric cancers

Kwak Y, Song IH, Ahn S, Seo AN, Kim JM, Kim H, Kim HK, Kim HS, Nahm JH, Shin OR, Lee SH, Lee HS, Chang HK, Cho MY, Han HS, Bae HI, Sohn JH, Shin SJ, Oh HJ, Kim JH, Ryu KW, Kim YI, Choi IJ, Park B, Park DY, Kook MC.

Virchows Archiv. 2026;488(6):1253-63. doi: 10.1007/s00428-025-04201-7

Interaction between ENPP1 and homologous recombination deficiency defines distinct pan-cancer signatures: A retrospective observational study

Kim YM, Lee SH, Na W, Lee IJ, Kwon M, Jo O, Song YS.

Medicine (United States). 2026;105(1). doi: 10.1097/MD.0000000000047164

The density of tumour infiltrating lymphocytes in oesophago-gastric cancer varies with disease stage, geographical region and treatment: a post hoc analysis of nine phase III clinical trials

Keogh GA, Šefčovičová N, Arai T, Kook MC, Laye JP, Allum WH, Arif S, Athauda A, Chang HK, Cheong JH, Cho MY, Cunningham D, Heij L, Irvine AF, Kim HS, Kim H, Kim YW, Langley RE, Lee SH, von Loga K, Nankivell MG, Oshima T, Petty RD, Tan X, Tanaka S, Tsuburaya A, de Vos-Geelen J, West NP, Emmerson J, Stokes JR, Magee DR, Cairns DA, Grabsch HI.

Gastric Cancer. 2026. doi: 10.1007/s10120-026-01739-6